Skills › Knowledge Work Plugins › instrument-data-to-allotrope › requirements.txt
requirements.txt
26 lines · bio-research/skills/instrument-data-to-allotrope/requirements.txt at 2574e29
1# Instrument Data to Allotrope Skill - Pinned Dependencies
2#
3# These versions are pinned for reproducibility and determinism.
4# All scientists using this skill should install these exact versions
5# to ensure identical ASM output from the same input files.
6#
7# Installation:
8# pip install -r requirements.txt --break-system-packages
9#
10# Note: Versions pinned as of 2025-01-05
12# Core parsing library - provides native instrument parsers
13allotropy==0.1.55
15# Data manipulation and file reading
16pandas==2.0.3
18# Excel file support (required by pandas for .xlsx files)
19openpyxl==3.1.2
21# PDF parsing support (for instruments that export PDFs)
22pdfplumber==0.9.0
24# Scientific computing (optional, but recommended for advanced analysis)
25# numpy==1.24.3 # Uncomment if needed
26# scipy==1.11.1 # Uncomment if needed