05-decision-tree.md
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SKILL 5: Decision Tree Navigation ("The Altitude Dance")
Raw lines 1 to 2Overview
This skill teaches you to move fluidly between execution (Level 1: getting stuff done) and strategic evaluation (Level 2: critical thinking). Projects rarely unfold linearly—they require frequent course correction. Most trainees should spend MORE time on their project's decision tree.
Raw lines 3 to 5Core Principle
"Learn the altitude dance"
Move back and forth frequently between:
- Level 1: Full immersion in experimental details or coding
- Level 2: Step back, clear your head, evaluate as if someone else did the work
These cannot be done simultaneously. The key to navigating a project's decision tree is alternating between these levels deliberately.
Raw lines 6 to 14Key Concepts
Why Decision Trees Matter: Once you're in a project, the landscape changes:
- You've learned from initial experiments
- New papers have been published
- Technology has advanced
- Your assumptions have been tested
At any decision point, you should rarely follow your plan from 2 years ago—there will be a better alternative.
The Altitude Levels:
- Level 1 (Ground Level): Doing the work, troubleshooting, optimizing
- Level 2 (Strategic Altitude): What did we learn? What should we do next?
- Level 3 (Field Altitude): How does this fit in the broader landscape?
- Level 4 (Career Altitude): Is this the right use of my finite time?
Common Failure Modes:
- Stuck in Level 1: Troubleshooting endlessly without reassessing the plan
- Only Level 2: Brilliant strategist but never rolls up sleeves
- No rhythm: Switching randomly instead of deliberately
Workflow
Raw lines 37 to 38Phase 1: Map Your Decision Tree
For your project, identify:
- Initial plan: What was the intended path?
- Branch points: Where might alternative paths emerge?
- Decision criteria: What determines which branch to take?
- New information: What could change the landscape?
Phase 2: Establish Your Rhythm
Recommended Schedule:
- Daily: Level 1 work (experiments, coding, analysis)
- Weekly: Level 2 evaluation (1-2 hours, ideally Friday afternoon)
- Monthly: Level 3 field review (read new papers, attend seminars)
- Quarterly: Level 4 career check-in (with mentor)
Level 2 Weekly Protocol:
- Clear your head (walk, coffee, change of scene)
- Review what happened this week
- Ask: What did we learn?
- Ask: What should happen next?
- Update decision tree
- Plan next week's Level 1 work
Phase 3: Decision Points
At each major branch point:
Example: Genetic Screen Hits Wall
Instead of endless troubleshooting:
- Alternative 1: Redo computational analysis with larger genome dataset
- Alternative 2: Use AlphaFold models to search for similar folds
- Alternative 3: Print and test larger candidate set (DNA synthesis cheaper now)
Framework:
- Acknowledge the stuck point
- Step to Level 2: Evaluate with fresh eyes
- Consider: What's newly possible? (technology, knowledge)
- Generate 3 alternatives
- Decide: Troubleshoot more vs. pursue alternative
Output: Decision Tree Map
- Visual map of your project's decision points
- Update frequency schedule
- Criteria for each branch point
- Protocol for getting unstuck