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05-decision-tree.md

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1# SKILL 5: Decision Tree Navigation ("The Altitude Dance")
2

SKILL 5: Decision Tree Navigation ("The Altitude Dance")

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3## Overview
4This skill teaches you to move fluidly between execution (Level 1: getting stuff done) and strategic evaluation (Level 2: critical thinking). Projects rarely unfold linearly—they require frequent course correction. Most trainees should spend MORE time on their project's decision tree.
5

Overview

This skill teaches you to move fluidly between execution (Level 1: getting stuff done) and strategic evaluation (Level 2: critical thinking). Projects rarely unfold linearly—they require frequent course correction. Most trainees should spend MORE time on their project's decision tree.

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6## Core Principle
7**"Learn the altitude dance"**
8
9Move back and forth frequently between:
10- **Level 1:** Full immersion in experimental details or coding
11- **Level 2:** Step back, clear your head, evaluate as if someone else did the work
13These cannot be done simultaneously. The key to navigating a project's decision tree is alternating between these levels deliberately.

Core Principle

"Learn the altitude dance"

Move back and forth frequently between:

  • Level 1: Full immersion in experimental details or coding
  • Level 2: Step back, clear your head, evaluate as if someone else did the work

These cannot be done simultaneously. The key to navigating a project's decision tree is alternating between these levels deliberately.

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15## Key Concepts
17**Why Decision Trees Matter:**
18Once you're in a project, the landscape changes:
19- You've learned from initial experiments
20- New papers have been published
21- Technology has advanced
22- Your assumptions have been tested
24At any decision point, you should rarely follow your plan from 2 years ago—there will be a better alternative.
26**The Altitude Levels:**
27- **Level 1 (Ground Level):** Doing the work, troubleshooting, optimizing
28- **Level 2 (Strategic Altitude):** What did we learn? What should we do next?
29- **Level 3 (Field Altitude):** How does this fit in the broader landscape?
30- **Level 4 (Career Altitude):** Is this the right use of my finite time?
32**Common Failure Modes:**
331. **Stuck in Level 1:** Troubleshooting endlessly without reassessing the plan
342. **Only Level 2:** Brilliant strategist but never rolls up sleeves
353. **No rhythm:** Switching randomly instead of deliberately

Key Concepts

Why Decision Trees Matter: Once you're in a project, the landscape changes:

  • You've learned from initial experiments
  • New papers have been published
  • Technology has advanced
  • Your assumptions have been tested

At any decision point, you should rarely follow your plan from 2 years ago—there will be a better alternative.

The Altitude Levels:

  • Level 1 (Ground Level): Doing the work, troubleshooting, optimizing
  • Level 2 (Strategic Altitude): What did we learn? What should we do next?
  • Level 3 (Field Altitude): How does this fit in the broader landscape?
  • Level 4 (Career Altitude): Is this the right use of my finite time?

Common Failure Modes:

  1. Stuck in Level 1: Troubleshooting endlessly without reassessing the plan
  2. Only Level 2: Brilliant strategist but never rolls up sleeves
  3. No rhythm: Switching randomly instead of deliberately
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37## Workflow
39### Phase 1: Map Your Decision Tree
41For your project, identify:
421. **Initial plan:** What was the intended path?
432. **Branch points:** Where might alternative paths emerge?
443. **Decision criteria:** What determines which branch to take?
454. **New information:** What could change the landscape?

Phase 1: Map Your Decision Tree

For your project, identify:

  1. Initial plan: What was the intended path?
  2. Branch points: Where might alternative paths emerge?
  3. Decision criteria: What determines which branch to take?
  4. New information: What could change the landscape?
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47### Phase 2: Establish Your Rhythm
49**Recommended Schedule:**
50- **Daily:** Level 1 work (experiments, coding, analysis)
51- **Weekly:** Level 2 evaluation (1-2 hours, ideally Friday afternoon)
52- **Monthly:** Level 3 field review (read new papers, attend seminars)
53- **Quarterly:** Level 4 career check-in (with mentor)
55**Level 2 Weekly Protocol:**
561. Clear your head (walk, coffee, change of scene)
572. Review what happened this week
583. Ask: What did we learn?
594. Ask: What should happen next?
605. Update decision tree
616. Plan next week's Level 1 work

Phase 2: Establish Your Rhythm

Recommended Schedule:

  • Daily: Level 1 work (experiments, coding, analysis)
  • Weekly: Level 2 evaluation (1-2 hours, ideally Friday afternoon)
  • Monthly: Level 3 field review (read new papers, attend seminars)
  • Quarterly: Level 4 career check-in (with mentor)

Level 2 Weekly Protocol:

  1. Clear your head (walk, coffee, change of scene)
  2. Review what happened this week
  3. Ask: What did we learn?
  4. Ask: What should happen next?
  5. Update decision tree
  6. Plan next week's Level 1 work
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63### Phase 3: Decision Points
65At each major branch point:
67**Example: Genetic Screen Hits Wall**
69Instead of endless troubleshooting:
70- **Alternative 1:** Redo computational analysis with larger genome dataset
71- **Alternative 2:** Use AlphaFold models to search for similar folds
72- **Alternative 3:** Print and test larger candidate set (DNA synthesis cheaper now)
74**Framework:**
751. **Acknowledge the stuck point**
762. **Step to Level 2:** Evaluate with fresh eyes
773. **Consider: What's newly possible?** (technology, knowledge)
784. **Generate 3 alternatives**
795. **Decide:** Troubleshoot more vs. pursue alternative

Phase 3: Decision Points

At each major branch point:

Example: Genetic Screen Hits Wall

Instead of endless troubleshooting:

  • Alternative 1: Redo computational analysis with larger genome dataset
  • Alternative 2: Use AlphaFold models to search for similar folds
  • Alternative 3: Print and test larger candidate set (DNA synthesis cheaper now)

Framework:

  1. Acknowledge the stuck point
  2. Step to Level 2: Evaluate with fresh eyes
  3. Consider: What's newly possible? (technology, knowledge)
  4. Generate 3 alternatives
  5. Decide: Troubleshoot more vs. pursue alternative
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81## Output: Decision Tree Map
82- Visual map of your project's decision points
83- Update frequency schedule
84- Criteria for each branch point
85- Protocol for getting unstuck

Output: Decision Tree Map

  • Visual map of your project's decision points
  • Update frequency schedule
  • Criteria for each branch point
  • Protocol for getting unstuck
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