authorship_ai_confidentiality.md
118 lines · skills/scientific-writing/references/authorship_ai_confidentiality.md at 5f2bc03
Most marks come from matching words in the file, so treat them as pointers.
Authorship, CRediT, AI, and Confidentiality
Raw lines 1 to 2Human authorship and accountability
Use the current target-journal authorship policy. For biomedical work, ICMJE's four criteria require substantial contribution, drafting or critical revision, final approval, and accountability for all aspects of the work [SW-S01].
AI systems and other nonhuman tools are not authors. They cannot approve the work, accept accountability, disclose conflicts, or manage copyright and license agreements [SW-S01, SW-S03].
Do not:
- add or remove an author without all required human approvals;
- infer contributions from author order, affiliations, or email;
- generate an author-contribution statement from incomplete records;
- use CRediT roles as a substitute for the venue's authorship criteria.
CRediT
CRediT is the ANSI/NISO Z39.104-2022 taxonomy of 14 contributor roles. The standard explicitly describes contributions and does not define authorship [SW-S19].
Record only roles confirmed by the contributor and accountable author team:
- Conceptualization
- Data curation
- Formal analysis
- Funding acquisition
- Investigation
- Methodology
- Project administration
- Resources
- Software
- Supervision
- Validation
- Visualization
- Writing – original draft
- Writing – review & editing
One person may have multiple roles; a project need not use every role. Non-author contributors may also receive appropriate credit and acknowledgment subject to consent and journal policy.
Raw lines 20 to 45AI-use disclosure
The January 2026 ICMJE Recommendations call for disclosure of the AI tool and purpose in the cover letter and appropriate manuscript section. Writing assistance belongs in acknowledgments; use for data collection, analysis, or figure generation belongs in Methods as applicable [SW-S01, SW-S02]. COPE's formal position likewise requires disclosure and keeps full responsibility with human authors [SW-S03].
Journal and publisher rules differ and evolve. Check them at the time of use and again before submission. Record:
- tool, provider, and version or access date;
- purpose and affected stage;
- whether output entered text, code, analysis, tables, or figures;
- human verification performed;
- disclosure locations required by the venue;
- what material, if any, was sent outside the approved environment;
- authorization and policy review for any restricted transfer.
Do not fabricate an AI-use statement or claim that no AI was used. Obtain confirmation from the human authors.
Raw lines 46 to 68Confidentiality boundary
Do not send any of the following to an external service without explicit authorization and a documented policy review:
- unpublished manuscripts or drafts;
- peer-review or editorial material;
- sensitive or restricted data;
- protected health information or other personal data;
- proprietary or contract-restricted content;
- source documents, including full articles, reports, protocols, and datasets.
Authorization must come from a person or body empowered to grant it and must be consistent with journal policy, consent, ethics approval, contracts, law, institutional policy, and data-use terms. Removing obvious names does not by itself make content safe.
When authorization is absent or unclear, keep processing local and use only minimal metadata. This skill's bundled tools make no network calls and do not read environment variables or .env files.
ICMJE treats submitted manuscripts as privileged communications and warns editors and reviewers not to upload them to AI systems where confidentiality cannot be assured without author permission [SW-S01]. JAMA provides a journal-policy example with the same confidentiality concern [SW-S24].
Raw lines 69 to 93COPE status as of the research date
COPE's 2017 Core Practices were retired in 2024. The Code of Conduct for COPE Members was published on 21 July 2026, with 12 months from first publication for implementation. It sits alongside the 2026 Core Principles [SW-S04, SW-S05]. Use current topic-specific guidance; distinguish formal positions from discussion documents, webinars, comments, and case advice.
Raw lines 94 to 101Validation
Populate authorship.json, then run:
python3 scripts/validate_authorship.py authorship.jsonThe validator checks human authorship gates, exact CRediT role names, guarantors, final approval, declaration-hash syntax, AI disclosure, and restricted external-transfer gates. It does not compare declaration hashes against manuscript statements. These are ICMJE-style local gates, not a universal authorship standard. For example, Nature Portfolio uses a different contribution criterion [SW-S23]. The guarantor record is a local accountability convention, not a claim that all journals require one. Do not falsely attest to a gate to pass the tool; document the actual venue criteria and any local-validator limitation. The tool cannot adjudicate contribution disputes or determine who deserves authorship.
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