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journal_requirements.md

170 lines · skills/scientific-visualization/references/journal_requirements.md at 5f2bc03

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Most marks come from matching words in the file, so treat them as pointers.

1# Publisher and Journal Figure Snapshots
2
3Reviewed 2026-10-01 against official pages, except the explicitly historical Science snapshot below. Requirements are date-sensitive and often depend on the journal, article type, figure type, and submission phase. Verify the live target-journal page before submission. Source IDs resolve in `sources.md`.
4
5The machine-readable subset in `assets/publisher_profiles.json` is for planning and deterministic screening only. `scripts/export_plan.py` never claims compliance.
6

Publisher and Journal Figure Snapshots

Reviewed 2026-10-01 against official pages, except the explicitly historical Science snapshot below. Requirements are date-sensitive and often depend on the journal, article type, figure type, and submission phase. Verify the live target-journal page before submission. Source IDs resolve in sources.md.

The machine-readable subset in assets/publisher_profiles.json is for planning and deterministic screening only. scripts/export_plan.py never claims compliance.

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Runs code scripts/export_plan.py :5
7## Nature (flagship journal)
8
9**Scope:** `Nature` final submission after acceptance in principle, not all Nature Portfolio journals [NATURE-FINAL] [NATURE-FIG].
11- Standard widths: 89 mm single column, 183 mm double column; 120-136 mm is possible for one-and-a-half columns.
12- Full page depth: 247 mm.
13- Panels: lowercase bold upright `a`, `b`, `c`, 8 pt.
14- Other text: 5-7 pt at final size; Helvetica or Arial preferred.
15- Keep text and line art editable; do not outline or rasterize them.
16- Preferred line/graph containers include AI, PostScript, vector EPS, and PDF.
17- Preferred raster source: layered PSD or TIFF. The final-submission page states 300-600 dpi for photographs; minimum 300 dpi at maximum use size.
18- The newer research-figure guide recommends export images at 450 dpi or above because online proofs top out at 450 dpi. This is a recommendation layered on the final-submission minimum, not a universal 450 dpi rule.
19- RGB is recommended; final print conversion may use CMYK.
20- Type 42 fonts are requested. The figure guide explicitly gives `matplotlib.rcParams["pdf.fonttype"] = 42`.
21- High-quality JPEG can be accepted when it is the only option for a photograph. Therefore, “Nature never accepts JPEG” is false.
22- Extended Data has different rules: RGB, maximum 300 ppi, maximum 10 MB, and JPEG preferred with TIFF/EPS alternatives.
24Do not apply these flagship rules automatically to Nature Communications, Scientific Reports, npj journals, or Nature Reviews; each has its own page.

Nature (flagship journal)

Scope: Nature final submission after acceptance in principle, not all Nature Portfolio journals [NATURE-FINAL] [NATURE-FIG].

  • Standard widths: 89 mm single column, 183 mm double column; 120-136 mm is possible for one-and-a-half columns.
  • Full page depth: 247 mm.
  • Panels: lowercase bold upright a, b, c, 8 pt.
  • Other text: 5-7 pt at final size; Helvetica or Arial preferred.
  • Keep text and line art editable; do not outline or rasterize them.
  • Preferred line/graph containers include AI, PostScript, vector EPS, and PDF.
  • Preferred raster source: layered PSD or TIFF. The final-submission page states 300-600 dpi for photographs; minimum 300 dpi at maximum use size.
  • The newer research-figure guide recommends export images at 450 dpi or above because online proofs top out at 450 dpi. This is a recommendation layered on the final-submission minimum, not a universal 450 dpi rule.
  • RGB is recommended; final print conversion may use CMYK.
  • Type 42 fonts are requested. The figure guide explicitly gives matplotlib.rcParams["pdf.fonttype"] = 42.
  • High-quality JPEG can be accepted when it is the only option for a photograph. Therefore, “Nature never accepts JPEG” is false.
  • Extended Data has different rules: RGB, maximum 300 ppi, maximum 10 MB, and JPEG preferred with TIFF/EPS alternatives.

Do not apply these flagship rules automatically to Nature Communications, Scientific Reports, npj journals, or Nature Reviews; each has its own page.

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26## Science (AAAS flagship journal)
28**Scope:** historical `Science` snapshot accessed 2026-07-23, with separate initial and revised stages [SCIENCE-INITIAL] [SCIENCE-REVISED]. Both pages blocked direct and fresh extraction on 2026-10-01. The numbers below remain provisional until live instructions are checked.

Science (AAAS flagship journal)

Scope: historical Science snapshot accessed 2026-07-23, with separate initial and revised stages [SCIENCE-INITIAL] [SCIENCE-REVISED]. Both pages blocked direct and fresh extraction on 2026-10-01. The numbers below remain provisional until live instructions are checked.

Raw lines 26 to 29
30### Initial submission
32- A single manuscript file with embedded figures is preferred.
33- Figures should be 300 dpi for review.
34- Printed widths are usually 5.7 cm (one column), 12.1 cm (two columns), or 18.4 cm (three columns).
35- Vector creation is preferred.
36- Use sans serif, preferably Helvetica. Lettering should be about 7 pt after reduction and no smaller than 5 pt.
37- Avoid red/green combinations and similar hues as sole identifiers; add shape/texture where needed.
38- Scales should not extend beyond the plotted data merely as empty range.

Initial submission

  • A single manuscript file with embedded figures is preferred.
  • Figures should be 300 dpi for review.
  • Printed widths are usually 5.7 cm (one column), 12.1 cm (two columns), or 18.4 cm (three columns).
  • Vector creation is preferred.
  • Use sans serif, preferably Helvetica. Lettering should be about 7 pt after reduction and no smaller than 5 pt.
  • Avoid red/green combinations and similar hues as sole identifiers; add shape/texture where needed.
  • Scales should not extend beyond the plotted data merely as empty range.
Raw lines 30 to 39
40### Revised manuscript
42- Upload each figure separately.
43- Preferred vector formats: PDF, EPS, or AI.
44- Raster illustrations/diagrams and photographs/microscopy: TIFF.
45- Vector/raster combinations: PDF or EPS.
46- Line art without a vector original: at least 300 dpi at final size, preferably higher.
47- Color and grayscale images: at least 300 dpi at final size.
48- Upsampling is not permitted.
49- PowerPoint and figures embedded in Word are not accepted at this stage.
51The 2026-07-23 snapshot did **not** state the older blanket “1,000 dpi line art / 600 dpi combination” numbers that this skill previously claimed.
53Science Advances and other AAAS journals publish separate figure guides; do not reuse the flagship profile without checking.

Revised manuscript

  • Upload each figure separately.
  • Preferred vector formats: PDF, EPS, or AI.
  • Raster illustrations/diagrams and photographs/microscopy: TIFF.
  • Vector/raster combinations: PDF or EPS.
  • Line art without a vector original: at least 300 dpi at final size, preferably higher.
  • Color and grayscale images: at least 300 dpi at final size.
  • Upsampling is not permitted.
  • PowerPoint and figures embedded in Word are not accepted at this stage.

The 2026-07-23 snapshot did not state the older blanket “1,000 dpi line art / 600 dpi combination” numbers that this skill previously claimed.

Science Advances and other AAAS journals publish separate figure guides; do not reuse the flagship profile without checking.

Raw lines 40 to 54
55## Cell Press
57**Scope:** general Cell Press figure page; exceptions are explicitly listed for STAR Protocols and `Cell` Leading Edge [CELL-FIG].

Cell Press

Scope: general Cell Press figure page; exceptions are explicitly listed for STAR Protocols and Cell Leading Edge [CELL-FIG].

Raw lines 55 to 58
59### Initial submission and review
61- Cell Press accepts a wide range of formats, sizes, and resolutions.
62- Figures may be embedded or uploaded separately.
63- Individual 1-2 MB files are recommended for reviewer convenience.

Initial submission and review

  • Cell Press accepts a wide range of formats, sizes, and resolutions.
  • Figures may be embedded or uploaded separately.
  • Individual 1-2 MB files are recommended for reviewer convenience.
Raw lines 59 to 64
65### Final production
67- Upload each main figure as one separate file containing all its panels; keep titles/legends in the manuscript.
68- Recommended overall maximum: 16.5 × 20 cm. This is framed as a recommendation.
69- Two-column article widths: 8.5 cm, 11.4 cm, and 17.4 cm.
70- Three-column formats: 5.5 cm, 11.4 cm, and 17.4 cm.
71- Maximum individual file size: 20 MB.
72- TIFF and PDF are preferred for most journals/types. EPS, JPEG, and CDX are accepted. Special cases differ.
73- Color/grayscale: at least 300 dpi; black-and-white: at least 500 dpi; line art: at least 1,000 dpi at final size.
74- RGB, Arial, capital panel letters, 6-8 pt text, and 0.5-1.5 pt strokes.
75- Embed fonts. General production guidance says flatten layers, except specified `Cell` Leading Edge material.
76- Do not use red and green together as the only distinction.
78Cell Press requires minimal image processing, original unprocessed data on request, and disclosure of processing/stitching. Its current policy prohibits generative AI/AI-assisted alteration of research/data images, including brightness, contrast, or color-balance adjustment performed by such tools.

Final production

  • Upload each main figure as one separate file containing all its panels; keep titles/legends in the manuscript.
  • Recommended overall maximum: 16.5 × 20 cm. This is framed as a recommendation.
  • Two-column article widths: 8.5 cm, 11.4 cm, and 17.4 cm.
  • Three-column formats: 5.5 cm, 11.4 cm, and 17.4 cm.
  • Maximum individual file size: 20 MB.
  • TIFF and PDF are preferred for most journals/types. EPS, JPEG, and CDX are accepted. Special cases differ.
  • Color/grayscale: at least 300 dpi; black-and-white: at least 500 dpi; line art: at least 1,000 dpi at final size.
  • RGB, Arial, capital panel letters, 6-8 pt text, and 0.5-1.5 pt strokes.
  • Embed fonts. General production guidance says flatten layers, except specified Cell Leading Edge material.
  • Do not use red and green together as the only distinction.

Cell Press requires minimal image processing, original unprocessed data on request, and disclosure of processing/stitching. Its current policy prohibits generative AI/AI-assisted alteration of research/data images, including brightness, contrast, or color-balance adjustment performed by such tools.

Raw lines 65 to 79
80## PLOS research journals
82**Scope:** current PLOS Computational Biology page, consistent with the sampled PLOS research-journal figure pages [PLOS-FIG]. Verify the selected PLOS journal.
84- Formatting requirements are waived until provisional Editorial Accept.
85- Final figure format: TIFF or EPS.
86- Width: 789-2250 px at 300 dpi, equivalent to 6.68-19.05 cm.
87- Text-column alignment recommendation: no wider than 13.2 cm.
88- Maximum height: 2625 px at 300 dpi, equivalent to 22.23 cm.
89- Resolution: 300-600 dpi at final dimensions. The page warns that above 600 may trigger resizing and below 300 will degrade output.
90- The summary table says less than 10 MB; the detailed section says 10 MB or less. The planner conservatively uses the stricter boundary and flags the inconsistency.
91- Text: Arial, Times, or Symbol, 8-12 pt.
92- Color mode: RGB 8-bit/channel or grayscale.
93- Put all panels of one figure in one single-page file. TIFF must have no alpha channel and must use LZW compression.
94- The pixel bounds are expressed at 300 dpi: a 600 dpi raster at the same physical size contains twice as many pixels per axis. The screen compares physical size via its 300 dpi equivalent, not an absolute 2250-pixel cap.
95- Captions remain in the manuscript; filenames are `Fig1.tif`, `Fig2.eps`, and so on.
96- Do not increase pixel count and present that as improved resolution.
98For manuscripts submitted on or after 2026-04-01, original uncropped, minimally adjusted blot/gel images must be supplied before acceptance. Adjustments must not alter scientific information and must be applied consistently.

PLOS research journals

Scope: current PLOS Computational Biology page, consistent with the sampled PLOS research-journal figure pages [PLOS-FIG]. Verify the selected PLOS journal.

  • Formatting requirements are waived until provisional Editorial Accept.
  • Final figure format: TIFF or EPS.
  • Width: 789-2250 px at 300 dpi, equivalent to 6.68-19.05 cm.
  • Text-column alignment recommendation: no wider than 13.2 cm.
  • Maximum height: 2625 px at 300 dpi, equivalent to 22.23 cm.
  • Resolution: 300-600 dpi at final dimensions. The page warns that above 600 may trigger resizing and below 300 will degrade output.
  • The summary table says less than 10 MB; the detailed section says 10 MB or less. The planner conservatively uses the stricter boundary and flags the inconsistency.
  • Text: Arial, Times, or Symbol, 8-12 pt.
  • Color mode: RGB 8-bit/channel or grayscale.
  • Put all panels of one figure in one single-page file. TIFF must have no alpha channel and must use LZW compression.
  • The pixel bounds are expressed at 300 dpi: a 600 dpi raster at the same physical size contains twice as many pixels per axis. The screen compares physical size via its 300 dpi equivalent, not an absolute 2250-pixel cap.
  • Captions remain in the manuscript; filenames are Fig1.tif, Fig2.eps, and so on.
  • Do not increase pixel count and present that as improved resolution.

For manuscripts submitted on or after 2026-04-01, original uncropped, minimally adjusted blot/gel images must be supplied before acceptance. Adjustments must not alter scientific information and must be applied consistently.

Raw lines 80 to 99
100## Elsevier
102**Scope:** publisher-general artwork instructions. Elsevier explicitly says journal-specific Guides for Authors can override them [ELSEVIER-FORMAT] [ELSEVIER-SIZE].
104- Recommended containers: TIFF for halftones/bitmaps, EPS for vector-based images (including embedded images), and PDF for vector/text material.
105- JPEG and Microsoft Office files are accepted in the general checklist; use the journal page to decide suitability.
106- RGB is preferred unless the journal says otherwise.
107- General target widths: 90 mm single, 140 mm one-and-a-half, 190 mm full; 30 mm is the listed minimal size.
108- General raster targets at final size: 300 dpi halftone, 500 dpi combination, 1,000 dpi line art.
109- General lettering rule of thumb: 7 pt normal text, not smaller than 6 pt for sub/superscripts.
111These are publisher defaults, not universal Elsevier-journal hard limits.

Elsevier

Scope: publisher-general artwork instructions. Elsevier explicitly says journal-specific Guides for Authors can override them [ELSEVIER-FORMAT] [ELSEVIER-SIZE].

  • Recommended containers: TIFF for halftones/bitmaps, EPS for vector-based images (including embedded images), and PDF for vector/text material.
  • JPEG and Microsoft Office files are accepted in the general checklist; use the journal page to decide suitability.
  • RGB is preferred unless the journal says otherwise.
  • General target widths: 90 mm single, 140 mm one-and-a-half, 190 mm full; 30 mm is the listed minimal size.
  • General raster targets at final size: 300 dpi halftone, 500 dpi combination, 1,000 dpi line art.
  • General lettering rule of thumb: 7 pt normal text, not smaller than 6 pt for sub/superscripts.

These are publisher defaults, not universal Elsevier-journal hard limits.

Raw lines 100 to 112
113## IEEE journals
115**Scope:** IEEE Author Center journal graphics page, modified 2025-02-25 [IEEE-SIZE].
117- Acceptable vector formats listed on the page: PS, EPS, PDF.
118- Non-vector color/grayscale graphics: **greater than** 300 dpi.
119- Black-and-white line art: **greater than** 600 dpi.
120- One-column width: 3.5 in / 88.9 mm.
121- Two-column width: 7.16 in / 182 mm.
122- IEEE warns that increasing resolution after creation does not improve quality.
124Conference and magazine instructions can differ; use their separate Author Center pages.

IEEE journals

Scope: IEEE Author Center journal graphics page, modified 2025-02-25 [IEEE-SIZE].

  • Acceptable vector formats listed on the page: PS, EPS, PDF.
  • Non-vector color/grayscale graphics: greater than 300 dpi.
  • Black-and-white line art: greater than 600 dpi.
  • One-column width: 3.5 in / 88.9 mm.
  • Two-column width: 7.16 in / 182 mm.
  • IEEE warns that increasing resolution after creation does not improve quality.

Conference and magazine instructions can differ; use their separate Author Center pages.

Raw lines 113 to 125
126## BMC
128**Scope:** BMC Bioinformatics, used as a current BMC-journal example rather than a guaranteed BMC-wide profile [BMC-BIOINFO].
130- Web widths: 600 px standard, 1200 px high resolution.
131- PDF widths: 85 mm half page, 170 mm full page.
132- Maximum figure-plus-legend height: 225 mm.
133- Approximately 300 dpi at final size.
134- Fonts embedded; lines wider than 0.25 pt at final width.
135- Accepted formats include EPS, PDF, Word, PowerPoint, TIFF, JPEG, PNG, BMP, and CDX; JPEG is described as less suitable for graphical images.
136- One composite file per multi-panel figure; individual file maximum 10 MB.
138BMC Bioinformatics now redirects to Springer Nature Link. The approximate DPI target has no numeric tolerance and the height includes the legend; the planner reports these as review items rather than unconditional passes.

BMC

Scope: BMC Bioinformatics, used as a current BMC-journal example rather than a guaranteed BMC-wide profile [BMC-BIOINFO].

  • Web widths: 600 px standard, 1200 px high resolution.
  • PDF widths: 85 mm half page, 170 mm full page.
  • Maximum figure-plus-legend height: 225 mm.
  • Approximately 300 dpi at final size.
  • Fonts embedded; lines wider than 0.25 pt at final width.
  • Accepted formats include EPS, PDF, Word, PowerPoint, TIFF, JPEG, PNG, BMP, and CDX; JPEG is described as less suitable for graphical images.
  • One composite file per multi-panel figure; individual file maximum 10 MB.

BMC Bioinformatics now redirects to Springer Nature Link. The approximate DPI target has no numeric tolerance and the height includes the legend; the planner reports these as review items rather than unconditional passes.

Raw lines 126 to 139
140## ACS Publications
142**Scope:** legacy “Preparing Manuscript Graphics,” currently hosted on the official ACS Paragon Plus site with an explicit update date of 2006-01-21 [ACS-GRAPHICS]. It is not a current universal digital-export profile; use the selected journal’s Author Guidelines.
144- Listed maximum dimensions: 3.25 in single column, 7 in double column, 9.5 in length.
145- Lettering should be no smaller than 5 pt after reduction; Helvetica/Arial are suggested.
146- Lines should be no thinner than 1 pt on that general page.
147- The page mentions using the best available resolution and 600+ dpi printing, but it does not establish a universal per-figure digital file-format/DPI rule for all ACS journals.
149Use the selected ACS journal’s current Author Guidelines for formats, color, resolution, and TOC/abstract graphics. The planner intentionally does not invent missing ACS-wide requirements.

ACS Publications

Scope: legacy “Preparing Manuscript Graphics,” currently hosted on the official ACS Paragon Plus site with an explicit update date of 2006-01-21 [ACS-GRAPHICS]. It is not a current universal digital-export profile; use the selected journal’s Author Guidelines.

  • Listed maximum dimensions: 3.25 in single column, 7 in double column, 9.5 in length.
  • Lettering should be no smaller than 5 pt after reduction; Helvetica/Arial are suggested.
  • Lines should be no thinner than 1 pt on that general page.
  • The page mentions using the best available resolution and 600+ dpi printing, but it does not establish a universal per-figure digital file-format/DPI rule for all ACS journals.

Use the selected ACS journal’s current Author Guidelines for formats, color, resolution, and TOC/abstract graphics. The planner intentionally does not invent missing ACS-wide requirements.

Raw lines 140 to 150
151## Rules that are not universal
153Do not present these as cross-publisher laws:
155- “JPEG is never accepted.” Several publishers accept it for photographs or specific workflows.
156- “All line art must be 1,000/1,200 dpi.” Vector output is often preferred, and current Science revised guidance says at least 300 dpi when vector is unavailable.
157- “All publishers require grayscale compatibility.” Accessibility guidance varies; use redundant encoding regardless.
158- “All figures must be RGB.” RGB is often preferred, but Nature accepts RGB or CMYK for final print artwork and target-journal rules can differ.
159- “All figures need error bars/significance stars.” The right display depends on the estimand, data, and analysis.
160- “A matching DPI/width means compliant.” Technical metadata is only one part of submission review.

Rules that are not universal

Do not present these as cross-publisher laws:

  • “JPEG is never accepted.” Several publishers accept it for photographs or specific workflows.
  • “All line art must be 1,000/1,200 dpi.” Vector output is often preferred, and current Science revised guidance says at least 300 dpi when vector is unavailable.
  • “All publishers require grayscale compatibility.” Accessibility guidance varies; use redundant encoding regardless.
  • “All figures must be RGB.” RGB is often preferred, but Nature accepts RGB or CMYK for final print artwork and target-journal rules can differ.
  • “All figures need error bars/significance stars.” The right display depends on the estimand, data, and analysis.
  • “A matching DPI/width means compliant.” Technical metadata is only one part of submission review.
Raw lines 151 to 161
162## Submission-stage workflow
1641. Identify exact journal, article type, figure type, and current stage.
1652. Save the live official page URL and access date.
1663. Create a plan with `scripts/export_plan.py`.
1674. Export with explicit dimensions and settings.
1685. Inspect the delivered file with `scripts/image_metadata.py`.
1696. Review fonts, embedded rasters, image integrity, accessibility, caption, and source data manually.
1707. Re-check official instructions immediately before upload.

Submission-stage workflow

  1. Identify exact journal, article type, figure type, and current stage.
  2. Save the live official page URL and access date.
  3. Create a plan with scripts/export_plan.py.
  4. Export with explicit dimensions and settings.
  5. Inspect the delivered file with scripts/image_metadata.py.
  6. Review fonts, embedded rasters, image integrity, accessibility, caption, and source data manually.
  7. Re-check official instructions immediately before upload.
Raw lines 162 to 170
Runs code scripts/export_plan.py :166
Runs code scripts/image_metadata.py :168