Skills › Scientific Agent Skills › database-lookup › mousemine.md

mousemine.md

43 lines · skills/database-lookup/references/mousemine.md at 5f2bc03

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1# MouseMine (Mouse Genome Informatics, InterMine-based)

MouseMine (Mouse Genome Informatics, InterMine-based)

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3## Base URL

4```

5https://www.mousemine.org/mousemine/service

6```

Base URL

https://www.mousemine.org/mousemine/service

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8## Auth

9No auth for most queries. Free account token needed for saved lists.

Auth

No auth for most queries. Free account token needed for saved lists.

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11## Key Endpoints

13| Endpoint | Description |

14|----------|-------------|

15| `/search?q={query}&format=json` | Keyword search across all objects |

16| `/template/results?name={template}&op1=LOOKUP&value1={value}&format=json` | Run pre-built template query |

17| `/query/results` (POST) | Run custom PathQuery (XML) |

18| `/model` | Retrieve data model |

19| `/templates?format=json` | Discover currently available templates and editable constraints |

Key Endpoints

Endpoint	Description
`/search?q={query}&format=json`	Keyword search across all objects
`/template/results?name={template}&op1=LOOKUP&value1={value}&format=json`	Run pre-built template query
`/query/results` (POST)	Run custom PathQuery (XML)
`/model`	Retrieve data model
`/templates?format=json`	Discover currently available templates and editable constraints

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21## Example Calls

22```

23# Keyword search for Brca1

24https://www.mousemine.org/mousemine/service/search?q=Brca1&format=json

26# Discover templates before constructing template/results parameters

27https://www.mousemine.org/mousemine/service/templates?format=json

28```

Example Calls

# Keyword search for Brca1
https://www.mousemine.org/mousemine/service/search?q=Brca1&format=json

# Discover templates before constructing template/results parameters
https://www.mousemine.org/mousemine/service/templates?format=json

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30## Custom Query (POST)

31```

32POST /query/results

33Content-Type: application/x-www-form-urlencoded

34query=<query model="genomic" view="Gene.symbol Gene.name" sortOrder="Gene.symbol asc"><constraint path="Gene.organism.name" op="=" value="Mus musculus"/></query>&format=json

35```

Custom Query (POST)

POST /query/results
Content-Type: application/x-www-form-urlencoded
query=<query model="genomic" view="Gene.symbol Gene.name" sortOrder="Gene.symbol asc"><constraint path="Gene.organism.name" op="=" value="Mus musculus"/></query>&format=json

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37## Response Format

38JSON: `{"results": [...], "statusCode": 200}`. Also supports XML, TSV, CSV via `format` param.

Response Format

JSON: {"results": [...], "statusCode": 200}. Also supports XML, TSV, CSV via format param.

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40## Rate Limits

41No published limits. Be reasonable.

43The live template catalogue includes `MFeature_GO` (editable `SequenceFeature` lookup); `Gene_GO` is not present. Supply the template's actual constraint paths/operators and preserve the fixed organism/data-source constraints.

Rate Limits

No published limits. Be reasonable.

The live template catalogue includes MFeature_GO (editable SequenceFeature lookup); Gene_GO is not present. Supply the template's actual constraint paths/operators and preserve the fixed organism/data-source constraints.

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